"young plant reared from seed" (as opposed to a grafted shoot, etc.), 1650s, from seed (n.) + diminutive suffix -ling.
Entries linking to seedling
seed n.
Middle English sēd, from Old English sēd (Anglian), sæd (West Saxon), "that which may be sown; an individual grain of seed," from Proto-Germanic *sediz "seed" (source also of Old Norse sað, Old Saxon sad, Old Frisian sed, Middle Dutch saet, Old High German sat, German Saat). This is reconstructed to be from PIE *se-ti- "sowing," from root *sē- "to sow."
Figurative sense of "offspring, progeny, posterity," now rare or archaic except in biblical use, was in Old English; the figurative meaning "that from which anything springs, latent beginning" is by late Old English. From late 14c. as "act or time of sowing." The meaning "semen, male fecundating fluid," also now archaic or biblical, is from c. 1300. For the sporting sense (by 1924), see seed (v.).
-ling
diminutive word-forming element, early 14c., from Old English -ling a nominal suffix (not originally diminutive), from Proto-Germanic *-linga-; attested in historical Germanic languages as a simple suffix, but probably representing a fusion of two suffixes: 1. that represented by English -el (1), as in thimble, handle; and 2. -ing, suffix indicating "person or thing of a specific kind or origin;" in masculine nouns also "son of" (as in farthing, atheling, Old English horing "adulterer, fornicator"), from PIE *-(i)ko- (see -ic).
Both these suffixes had occasional diminutive force, but this was only slightly evident in Old English -ling and its equivalents in Germanic languages except Norse, where it commonly was used as a diminutive suffix, especially in words designating the young of animals (such as gæslingr "gosling"). Thus it is possible that the diminutive use that developed in Middle English is from Old Norse.